OMICtools is a workflow for genomic, transcriptomic, proteomic, and metabolomic data analysis. All tools have been classified by omic technologies (NGS, microarray, PCR, MS, NMR), applications and analytical steps. Publication: OMICtools: an informative directory for multi-omic data analysis

skewer
  (5/5)
The best trimmer I used so far because it takes indels into account, which is not the case for most of trimmers. Furthermore you can specify a ratio for mismatches and indels separately, which is very smart. I recommend !
Posted by Fabien Pichon on Mar 26, 2015
Weeder
  (5/5)
I wrote a review on Biostars about Weeder2:
https://www.biostars.org/p/116633/
Posted by Ian on Mar 23, 2015
MODA
  (2/5)
Dear Sir,
Please guide me with a link to download a dataset for testing it on MODA.
What file format is acceptable as input to the source code of MODA.
Posted by Kalyani Pawar on Mar 18, 2015
VENNY
  (5/5)
Great to have it back; such a great little gadget!
Posted by doogsinscotland on Feb 27, 2015
VENNY
  (5/5)
Hi,

Venny was updated to version 2.0. Now it is trivial to save it as a single html file and use it without internet conection. Enjoy!
Posted by Oliveros on Feb 26, 2015
ParkDB
http://www2.cancer.ucl.ac.uk/Parkinson_Db2/ link does not work
Posted by saraswathi S on Mar 27, 2015
freeIbis
@Gabriel
We have modified the URL.
Best
Posted by arnaud.desfeux@gmail.com on Mar 24, 2015
Mauve
@Aaron
We have modified the URL.
Best
Posted by Arnaud Desfeux on Mar 24, 2015
Mauve
The Mauve website has moved to http://darlinglab.org/mauve
Posted by Aaron Darling on Mar 24, 2015
CASVM
CASVM server is not working
Posted by Rajni on Mar 20, 2015