OMICtools is a workflow for genomic, transcriptomic, proteomic, and metabolomic data analysis. All tools have been classified by omic technologies (NGS, microarray, PCR, MS, NMR), applications and analytical steps. Publication: OMICtools: an informative directory for multi-omic data analysis

MiClip
  (1/5)
No longer available on the CRAN ?
Posted by N. Servant on May 19, 2015
LabImage 1D
  (5/5)
excellent 1D and western blot software
Posted by Harald on May 13, 2015
is-rSNP
  (3/5)
There is no standalone version for this tool. For the web service, the tool restricts the maximum number of input SNPs as 20.
Posted by Deepblue on Apr 29, 2015
CMGRN
  (5/5)
Good
Posted by KAORU on Apr 27, 2015
DESeq
  (4/5)
Very powerful R package for differential expression analyses. The new implementation, DESeq2, appears to be one of the most relevant approach to identify differentially expressed genes. Cons: As always it requires to use eSet-like classes
Posted by Claudia Armenise Quartz Bio on Apr 22, 2015
DoGSiteScorer
Thank you for give us the chance to use DoGSiteScorer. But today I have faced one problem. When I give the input PDB file for pocket analysis the server give me the following ERROR message. The message is as follows:
Prediction or classification not possible:


No pockets could be calculated for selection! Please change your input.

Please go back to the form and correct your input
Posted by Rahul Banik on May 21, 2015
BRIG
I'm trying to use BRIG to compare to genomes from the same species of bacteria, in fasta format, but the image is generated without any color and informations. Just the title and the backbone of the reference genome. The blast runs without any error. Does anybody knows what can be happening? Thank you!
Posted by Adriana on May 14, 2015
F-Census
Dear Sir,

I used your database software (F-census) http://210.46.85.180:8080/fcensus/Search.jsp

I have to characterize my gene list into oncogene and Tumor suppressor gene in stomach cancer.

I was put the gene list in Quick Search by Gene Identifier

and then select all database, oncogenes and stomach cancer options. after submission, we got no result as,

There are 0 cancer genes from CGC and OMIM and TGDBs and Reviews and TSGDB and AGCOH and H-list and R-list as you selected

Please help me to solve this problem. Thanks for your cooperation

the genes list are as,

Gene Name
ITGB2
LY96
TLR10
TLR2
TLR3
VCAM1
HCK
MAPK8
RAC2
SOCS2
STAT6
C2
C3
C4A
CCL18
CCL19
CCL3
CCL4
CRP
CXCL13
CXCL2
CXCL9
HLA-DMA
HLA-DPB1
HLA-DQB1
HLA-DRB5
HSPH1
C11TA
PLAT
IFITM1
IRF4
MADCAM1
ALOX5
TLR5
CD53
TLR6
SLAMF1
PTPRC
FAIM3
CD180
TLR4
TLR1
CXCL3
CD47
IFNGR1
IL10RA
IL18RAP
ITGAX
IL8


Faisal Aziz,PhD
The Hormel Institute
Austin, Minnesota
Posted by faisal aziz on May 14, 2015
TFBSGroup
Link broken
Posted by Nevis Fregien on May 13, 2015
IGDB.NSCLC
When I click on the link provided, a new window opens saying "can't find the server at igdb.nsclc.ibms". I have tried opening the link on multiple computers and with multiple different browsers, all with no success.
Posted by Elizabeth on May 13, 2015