OMICtools is a workflow for genomic, transcriptomic, proteomic, and metabolomic data analysis. All tools have been classified by omic technologies (NGS, microarray, PCR, MS, NMR). Publication:
(Henry et al., 2014) OMICtools: an informative directory for multi-omic data analysis. Database.

ASCAT
  (5/5)
I'm very happy with this tool to find SCNA in cancer genomes without the need of a matched normal.
To remove CG-noise in the data I use PennCNV prior to ASCAT, it works very well in most of the samples.
Posted by mmoisse on Dec 01, 2014
POLYVIEW-MM
  (5/5)
An online molecule viewer - and for what it does - it does it well - my only suggestion would be to provide a larger panel / frame in which to display the molecule in high resolution
Posted by John Hart on Dec 01, 2014
ABCpred
  (5/5)
This is heavily used software for predicting B-cell epitopes
Posted by Raghava on Nov 30, 2014
SSPACE-LongRead
  (2/5)
Too slow (very very very) at the last writing step.
But there are no choice.
Posted by Hanseong Roh on Nov 27, 2014
OpenMS
  (5/5)
great set of tools with a steep learning curve
Posted by achimt on Nov 20, 2014
LocalAli
  (5/5)
Cool! A multiple local network alignment tool.
Posted by Oliver on Nov 11, 2014
LigDig
Thanks for listing the ligdig webserver on the page:
http://omictools.com/ligdig-s7422.html

However, the URL in the URL section should be
mcm.h-its.org/ligdig instead of mcm.h-its.org

All the best,

Stefan Richter
Posted by Stefan Richter on Dec 10, 2014
gNOME
cant sign up
Posted by REMYA on Dec 09, 2014
TE-Tracker (currently down)
Dear all,
we have fixed the link we provided in the abstract of this paper, and the web address should now be accessible.

Many thanks,

Arthur Gilly
Posted by Arthur Gilly on Dec 08, 2014
iGPCR-drug
Hi, sir:
http://www.jci-bioinfo.cn/iGPCR-Drug/
the the software on that webpage does not work any more since 4:00pm on 2012/12/7
Posted by SQ-J on Dec 08, 2014
DROMPA
Hi Lynn, please tell me the OS of your PC and error messages when installing drompa (latest version).
Posted by Ryu NAKATO on Dec 05, 2014
MetaMapp
Unfortunately there is no access to the MetaMapp webpage...
Posted by Sara Tulipani on Dec 04, 2014
DROMPA
Can not get any version of this program to compile
Posted by Lynn on Dec 03, 2014