Uncategorized tools for RNA sequencing analysis.
  • Filter by type of tool:

digitagCT

An integrated bioinformatics approach that combines DGE tags, RNA-Seq, tiling array expression data and species-comparison to explore new transcriptional regions and their specific biological features, particularly...

genCAT

It is an open platform that allows users to incorporate as many datasets (concepts) as possible to annotate the input gene list, as long as these datasets are prepared in bigwig, BED, BAM/SAM formats.

GSAASeqSP

A toolset for genome-wide gene set association analysis of sequence count data.

NASTIseq

Integrated detection of natural antisense transcripts using strand-specific RNA sequencing data.

Parseq

A statistical approach for transcription landscape reconstruction at a basepair resolution from RNA Seq read counts.

PLEK

An alignment-free tool which uses a computational pipeline based on an improved k-mer scheme and a support vector machine (SVM) algorithm to distinguish lncRNAs from messenger RNAs (mRNAs), in the absence of genomic...

seq2HLA

A method for obtaining an individualXs HLA class I and II type and expression using standard NGS RNA-Seq data.

UTR

A change-point model for detecting 3'UTR changes by RNA-Seq.

XSAnno

A computational framework that integrates previous approaches with multiple filters to improve the accuracy of inter-species transcriptome comparisons.