Uncategorized tools for RNA sequencing analysis.

ALEA

A computational toolbox for allele-specific (AS) epigenomics analysis.

digitagCT

An integrated bioinformatics approach that combines DGE tags, RNA-Seq, tiling array expression data and species-comparison to explore new transcriptional regions and their specific biological features, particularly tissue expression or conservation.

genCAT

It is an open platform that allows users to incorporate as many datasets (concepts) as possible to annotate the input gene list, as long as these datasets are prepared in bigwig, BED, BAM/SAM formats.

NASTIseq

Integrated detection of natural antisense transcripts using strand-specific RNA sequencing data.

Parseq

A statistical approach for transcription landscape reconstruction at a basepair resolution from RNA Seq read counts.

seq2HLA

A method for obtaining an individualXs HLA class I and II type and expression using standard NGS RNA-Seq data.

UTR

A change-point model for detecting 3'UTR changes by RNA-Seq.