1. Workflow
Join community Sign in

A workflow for omic data analysis

12564 tools classified by omic technologies, applications and analytical steps

Omic Technologies

Omic Data

Epigenomic analysis software tools and databases

Epigenomics

Epigenomic analysis software tools and databases

Transcriptomic analysis software tools and databases

Transcriptomics

Transcriptomic analysis software tools and databases

Metabolomic analysis software tools and databases

Metabolomics

Metabolomic analysis software tools and databases

Fluxomic analysis software tools and databases

Fluxomics

Fluxomic analysis software tools and databases

Biological pathway analysis software tools and databases

Pathway analysis

Biological pathway analysis software tools and databases

Tools

Most Recent Tools

new
OMIC_12903
Multiple sequence alignment

amino acid Sequence VARiability Analysis Program
aSVARAP

A tool to analyse the variability along multiple amino acid sequences alignments. aSVARAP…

A tool to analyse the variability along multiple amino acid sequences alignments. aSVARAP is derived from SVARAP (Sequence VARiability Analysis Program) and is dedicated to amino acid sequences. It combine several advantages: (i) easy handling and…

new
OMIC_12902
Multiple sequence alignment

Sequence VARiability Analysis Program
SVARAP

A tool to analyse the variability along multiple nucleotide sequences alignments. SVARAP…

A tool to analyse the variability along multiple nucleotide sequences alignments. SVARAP calculates along the whole alignment the mean variability for a sliding window of 25 nucleotides. It combines several advantages: (i) easy handling and…

new
OMIC_12901
Protein-ligand docking

Automated Ligand-Based Active Site Alignment
Ligalign

An automated system for flexible ligand alignment and analysis. The LigAlign system…

An automated system for flexible ligand alignment and analysis. The LigAlign system extracts the set of ligands that is most self- consistent across the submitted structures. LigAlign automatically produces biochemically reasonable ligand…

new
OMIC_12900
Protein binding-site…

PocketAlign

A software to obtain structural superpositions of binding sites. PocketAlign encodes…

A software to obtain structural superpositions of binding sites. PocketAlign encodes shape descriptors in the form of geometric perspectives, supplemented by chemical group classification of the binding site residues. The shape descriptor considers…

Most Popular Tools

popular
OMIC_05565
Venn diagrams

VENNY

An interactive tool for comparing lists with Venn Diagrams.

An interactive tool for comparing lists with Venn Diagrams.

popular
OMIC_00090
Somatic SNV detection

SAMtools

A suite of programs for interacting with high-throughput sequencing data. It consists of…

A suite of programs for interacting with high-throughput sequencing data. It consists of three separate repositories: Samtools (Reading/writing/editing/indexing/viewing SAM/BAM/CRAM format), BCFtools (Reading/writing BCF2/VCF/gVCF files and…

popular
OMIC_00535
Transcription factor data

footprintDB

Predicts transcription factors which bind a specific DNA site or motif and DNA motifs or…

Predicts transcription factors which bind a specific DNA site or motif and DNA motifs or sites likely to be recognized by a specific DNA-binding protein.

popular
OMIC_02198
Variant effect prediction

SNPdryad

A computational method that can predict deleterious effect of amino acid substitutions…

A computational method that can predict deleterious effect of amino acid substitutions occurred in human proteins. SNPdryad outperforms other leading algorithms in accurately predicting deleterious nsSNPs.

Community

User reviews

jeya's avatar image

jeya

good

View PLNlncRbase page

xiaowei's avatar image

xiaowei

Good!

View MEtabolic MOdel research and development System page

xiaowei's avatar image

xiaowei

good!

View PathCase Metabolomics Analysis Workbench page

Recent discussions

Open
pysam err
Open
Citation
Open
VICUNA on Mac?
Open
input data
Open
Is this site working?
Open
Unable to access
Open
Incorrect official website
Open
Website is down!
Open
CentroidFold Web server

Financial and institutional partners