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Epigenomic analysis software tools and databases

Epigenomics

Epigenomic analysis software tools and databases

Transcriptomic analysis software tools and databases

Transcriptomics

Transcriptomic analysis software tools and databases

Metabolomic analysis software tools and databases

Metabolomics

Metabolomic analysis software tools and databases

Fluxomic analysis software tools and databases

Fluxomics

Fluxomic analysis software tools and databases

Biological pathway analysis software tools and databases

Pathway analysis

Biological pathway analysis software tools and databases

Browse by Omic Topics

Bioinformatics Tools

Most Recent Tools

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OMIC_13825
Phylogenetic tree…

Newick Utilities

A suite of UNIX shell programs for processing any number of phylogenetic trees…

A suite of UNIX shell programs for processing any number of phylogenetic trees of any size. Newick Utilities performs frequently-used tree operations without requiring user interaction. It allows…

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OMIC_13824
Variant prioritization

ifish integrated Functional inference of SNVs in human

A server for assessing whether a missense mutation is pathogenic or neutral in…

A server for assessing whether a missense mutation is pathogenic or neutral in light of gene/gene family specific features and genetic evidences. iFish predicts the pathogenicity of nonsynonymous…

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OMIC_13823
Workflows/pipelines

IRAP integrated RNA-seq Analysis Pipeline

A flexible RNA-seq analysis pipeline that allows the user to select and apply…

A flexible RNA-seq analysis pipeline that allows the user to select and apply their preferred combination of existing tools for mapping reads, quantifying expression and testing for differential…

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OMIC_13822
Structural motif detection

TSDD Transcript Structure and Domain Display

A publicly available, web-based program that provides publication quality…

A publicly available, web-based program that provides publication quality images of transcript structures and domains. TSDD relies on GFF/GFF3 files to draw the transcript structures and domains.…

Most Popular Tools

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OMIC_05565
Venn diagrams

VENNY

An interactive tool for comparing lists with Venn Diagrams.

An interactive tool for comparing lists with Venn Diagrams.

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OMIC_00090
Somatic SNV detection

SAMtools

A suite of programs for interacting with high-throughput sequencing data. It…

A suite of programs for interacting with high-throughput sequencing data. It can manipulate alignments in the SAM/BAM/CRAM formats : reading, writing, editing, indexing, viewing and converting…

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OMIC_00535
Transcription factor data

footprintDB

Predicts transcription factors which bind a specific DNA site or motif and DNA…

Predicts transcription factors which bind a specific DNA site or motif and DNA motifs or sites likely to be recognized by a specific DNA-binding protein.

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OMIC_02198
Variant effect prediction

SNPdryad

A computational method that can predict deleterious effect of amino acid…

A computational method that can predict deleterious effect of amino acid substitutions occurred in human proteins. SNPdryad outperforms other leading algorithms in accurately predicting deleterious…

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User reviews

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MELT by Daniel Webber

MELT was easy to install and run on SGE! It called our Alu and L1 RIPs accurately to the bp. It does a great job at…

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UMATracker by sss

Great tool

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ITEP by nick_youngblut

ITEP has pretty good documentation and support. Setup is pretty straight-forward, but it's not integrated into…

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