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Epigenomic analysis software tools and databases

Epigenomics

Epigenomic analysis software tools and databases

Metabolomic analysis software tools and databases

Metabolomics

Metabolomic analysis software tools and databases

Fluxomic analysis software tools and databases

Fluxomics

Fluxomic analysis software tools and databases

Biological pathway analysis software tools and databases

Pathway analysis

Biological pathway analysis software tools and databases

Browse by Omic Topics

Bioinformatics Tools

Most Recent Tools

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Manananggal
Desktop

Manananggal

Uses to detect alternative splicing events (ASEs). This application written in…

Uses to detect alternative splicing events (ASEs). This application written in Java can, through a web application, scans RNAseq data to identify them, and Manananggal can also be launched as a…

Metacoder
Desktop

Metacoder

Allows the user to easily manipulate, parse and visualize metabarcoding data…

Allows the user to easily manipulate, parse and visualize metabarcoding data for microbial taxonomy identification. Many used formats are supported, containing sequences, taxons or classification.…

GMRP
Desktop

GMRP GWAS-based Mendelian Randomization and Path analyses

Performs correlation and path analyses to construct path diagrams of causal…

Performs correlation and path analyses to construct path diagrams of causal variables to the disease. GMRP can perform analyses of Mendelian Randomization (MR), correlation, path of causal variables…

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PMM
Desktop

PMM Parallel Mixed Model

Contains R functions for fitting the Parallel Mixed Model (PMM) and analyzing…

Contains R functions for fitting the Parallel Mixed Model (PMM) and analyzing its results. The PMM approach is suitable for hit selection and cross-comparison of RNAi screens generated in experiments…

Most Popular Tools

VENNY
Web

VENNY

An interactive tool for comparing lists with Venn Diagrams.

An interactive tool for comparing lists with Venn Diagrams.

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SAMtools
Desktop

SAMtools

A suite of programs for interacting with high-throughput sequencing data. It…

A suite of programs for interacting with high-throughput sequencing data. It can manipulate alignments in the SAM/BAM/CRAM formats : reading, writing, editing, indexing, viewing and converting…

footprintDB
Data

footprintDB

Integrates several open access repositories of curated cis-elements, DNA…

Integrates several open access repositories of curated cis-elements, DNA motifs, and TFs into a unique repository. footprintDB systematically annotates the binding interfaces of the TFs by exploiting…

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Bowtie
Desktop

Bowtie

An ultrafast, memory-efficient short read aligner. It aligns short DNA…

An ultrafast, memory-efficient short read aligner. It aligns short DNA sequences (reads) to the human genome at a rate of over 25 million 35-bp reads per hour. Bowtie indexes the genome with a…

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User reviews

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MUpro by tehmina

its a very helpful tool. can anyone tell me the full form of this acronym MUPro

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RBP-Var by Fengbiao Mao

Good for post-transcriptional annotation of SNVs and RNA edits.

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ISPP by Jacob

ISPP allows you to explore your candidate protein coding gene which you found mutations in your WGS or WES. It would…

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