Dataset features

Specifications


Application: Gene expression microarray analysis
Number of samples: 44
Release date: Nov 9 2015
Last update date: Nov 9 2015
Access: Public
Dataset link Combined transcriptomics classifier analysis reveals a set of adverse effect genes for use as potential endpoint in effect based screening

Experimental Protocol


The data presented in our manuscript is part of a larger experiment which was performed in single, large loop design. Only the samples used in the study presented here are named while the other samples will remain unnamed. All the data can still be used for normalization after which the analysis presented in the manuscript can be replicated. A single channel, interwoven loop design was used to test animals exposed to a control and to 5 concentrations of cadmium and phenanthrene (cadmium concentrations are: cad_1 till cad_5: 5.8, 14.5, 28.9, 57.9 and 115.8 mg/Kg respectively and phenanthrene concentrations are: phe_1 till Phe_5: 0, 4.6, 11.4, 22.9, 45.8 and 91.6 mg/Kg soil respectively). Exposures lasted for 2 days and used 4 biological replicates per condition each containing 30 grams soil and 30 individuals.

Repositories


GEO

GSE70877

ArrayExpress

E-GEOD-70877

BioProject

PRJNA289752

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Contact


Tjalf de Boer