Dataset features

Specifications


Dataset type: Expression profiling by array
Number of samples: 24
Release date: Dec 26 2018
Last update date: Dec 26 2018
Access: Public
Dataset link Expression data from leaflets and roots of the tomato res mutant and its background genotype, wild-type (WT) (Solanum lycopersicum L. cv. Moneymaker), grown in control conditions and salt stress

Experimental Protocol


Gene expression was analysed in roots and leaves of WT and res plants in absence of stress (control) and when the phenotypic recovery of res mutant began to be observed after salt stress (5 days of 200 mM NaCl). Leaflets (from the first fully-expanded leaf) and roots were harvested and immediately frozen in liquid N2 for subsequent RNA extraction. Three biological replicates (each one including three plants) were considered for each genotype and treatment, resulting in a total of 24 samples. Microarrays analysis was performed using the GeneChip® Tomato Gene 1.1 ST Array Strip (Affymetrix).

Repositories


GEO

GSE106149

BioProject

PRJNA415744

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Contact


Irene Albaladejo