Dataset features

Specifications


Application: ChIP-seq analysis
Number of samples: 6
Release date: Mar 23 2017
Last update date: Nov 27 2018
Access: Public
Diseases: Breast Neoplasms, Neoplasms
Chemicals: Estrogens, Purines
Genes: FOSL1, ERBB2, E2F1, TP53, PAICS
Computational protocol: TCGA Data Portal, BaseSpace, FastQC, Trimmomatic, TopHat, SAMtools, Cufflinks, GSEA
Dataset link Systematic Functional Perturbations Uncover a Prognostic Genetic Network Driving Human Breast Cancer [ChIP-Seq]

Experimental Protocol


ChIP-Seq experiment to examine binding of transcription factors in metastatic breast cancer cell line (MDA-MB-231 LM2)

Repositories


GEO

GSE95303

ENA

SRP100644

BioProject

PRJNA376600

Download


Contact


Kenneth Ross

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