Dataset features

Specifications


Application: Gene expression microarray analysis
Number of samples: 18
Release date: May 12 2015
Last update date: Aug 11 2015
Access: Public
Diseases: Epilepsies, Partial
Mutations: p|SUB|A|44|K
Dataset link Atlantic salmon (Salmo salar) liver transcriptome response to diets containing camelina products

Experimental Protocol


Atlantic salmon were fed for 16 weeks with the FO or 100COSEFM10CM diet (three tanks per diet). Liver samples were taken from 7 fish from each tank at week 16. A universal reference design was used for the microarray experiment. For the test samples, RNA was used from individual livers of fish from the 2 treatment groups: FO and 100COSEFM10CM. For each treatment group we used 9 biological replicates (3 fish from each of 3 tanks). All test samples were labeled with Cy5. The common reference was a pool of 18 RNA samples from livers of fish from all individuals invovled in microarray experiment. The common reference was labeled with Cy3. Each individual test sample was hybridized together with the common reference sample on an array, so the experiment consisted of 18 arrays

Repositories


GEO

GSE56784

ArrayExpress

E-GEOD-56784

BioProject

PRJNA244581

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Contact


Xi Xue