Dataset features

Specifications


Application: ChIP-seq analysis
Number of samples: 4
Release date: Sep 9 2014
Last update date: Oct 10 2018
Access: Public
Computational protocol: BaseSpace, Trimmomatic, TopHat, Bowtie, HTSeq, edgeR, DESeq
Dataset link Global MEF2 target gene analysis in cardiac and skeletal muscle reveals novel regulation of DUSP6 by p38MAPKMEF2 signaling [ChIP-seq]

Experimental Protocol


MEF2A target genes were identified in 48 hr DM C2C12 myoblasts cells and primary cardiomyocytes using ChIP-exo. Binding profiles on MEF2A in each cell type were compared. Cross sectional-analysis between ChIP-exo identified targets and RNA-seq analysis of MEF2A deplted myoblasts was also done.

Repositories


GEO

GSE61204

ArrayExpress

E-GEOD-61204

ENA

SRP046328

BioProject

PRJNA260504

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Contact


John McDermott
John C McDermott

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