Dataset features

Specifications


Application: ChIP-seq analysis
Number of samples: 18
Release date: Nov 15 2011
Last update date: Nov 17 2017
Access: Public
Diseases: Neoplasms, Second Primary
Dataset link Genome-wide reductions in active chromatin, paused RNA Polymerase II and nucleosome turnover during heat shock

Experimental Protocol


High-throughput sequencing (Illumina HiSeq 2000) We have characterized changes to the active nucleosomal and subnucleosomal landscape during the heat shock response in Drosophila cells by genome-wide profiling of low-salt extracted micrococcal nuclease-treated nuclei, paused RNA Polymerase II and CATCH-IT nucleosome turnover.

Repositories


GEO

GSE30755

ArrayExpress

E-GEOD-30755

ENA

SRP034594

BioProject

PRJNA144131

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Contact


Jorja Henikoff