Dataset features

Specifications


Dataset type: Genome binding/occupancy profiling by high throughput sequencing
Number of samples: 771
Release date: Feb 18 2019
Last update date: Feb 19 2019
Access: Public
Dataset link cisTopic: cis-Regulatory topic modelling on single-cell ATAC-seq data

Experimental Protocol


Time series scATAC-seq (Fluidigm C1) and bulk OmniATAC-seq of SOX10 knockdown-induced phenotype switching in two melanoma cell lines. ChIP-seq of H3K27Ac on four melanoma cell lines.

Repositories


GEO

GSE114557

ENA

SRP147922

BioProject

PRJNA471732

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Contact


Stein Aerts