Dataset features

Specifications


Application: ChIP-seq analysis
Number of samples: 9
Release date: Oct 25 2012
Last update date: Sep 28 2018
Access: Public
Diseases: Leukemia
Chemicals: Ethanol
Dataset link Short-term time course of the effects of 1α,25-dihydroxyvitamin D3 treatment on open chromatin regions in THP-1 monocytic leukemia cells

Experimental Protocol


THP-1 monocytic leukemia cells were treated with 100 nM 1α,25-dihydroxyvitamin D3 for 20, 40, 60, 80, 100 and 120 min or with vehicle (0.1% (v/v) ethanol) for 20 and 100 min. Chromatin sample from one biological replicate for each time point was subjected to the FAIRE-seq protocol and subsequent data analysis using an Input chromatin sample as control.

Repositories


GEO

GSE40075

ArrayExpress

E-GEOD-40075

ENA

SRP014820

BioProject

PRJNA172741

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Contact


Sami Heikkinen

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