Dataset features

Specifications


Application: 4C-seq analysis
Number of samples: 19
Release date: Nov 28 2018
Last update date: Nov 30 2018
Access: Public
Diseases: Chromosome Disorders
Genes: TRA-TGC7-1
Taxon: Homo sapiens, Mus musculus
Dataset link Analysis of 3D interactions identifies candidate host genes that transposable elements potentially regulate (4C-Seq)

Experimental Protocol


We adapted 4C-seq protocols to amplify interactions from multiple sites by designing oligos that hybridized to the consensus sequence of specific endogenous retroviruses. This was applied to different cell types (B cells, fibroblasts and mouse embryonic stem cells) obtained from mice of different inbred strains.

Repositories


GEO

GSE122974

ENA

SRP170853

BioProject

PRJNA507091

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Contact


Jane Skok