Dataset features

Specifications


Application: DNA methylation array analysis
Number of samples: 48
Release date: Oct 23 2014
Last update date: Jan 2 2015
Access: Public
Diseases: Neoplasms, Disorders of Sex Development, Colorectal Neoplasms
Chemicals: Paraffin
Dataset link Feasibility and Interpretation of the Genome-wide Infinium Methylation Data Derived from Ligated Formalin Fixed Paraffin Embedded Paired Tumor and Normal Tissue.

Experimental Protocol


We used Illumina’s Infinium Methylation 27 K chip for 12 pairs of FF and 12 pairs of FFPE tissue from tumor and surrounding healthy tissue from the resected colon of the same individual after repairing the FFPE DNA using Thirwell’s modified protocol.

Repositories


GEO

GSE33181

ArrayExpress

E-GEOD-33181

BioProject

PRJNA149199

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Contact


Muhammad Kibriya
Muhammad Ghulam Kibriya