Dataset features

Specifications


Application: RNA-seq analysis
Number of samples: 24
Release date: Sep 12 2014
Last update date: Jun 20 2017
Access: Public
Taxon: Zea mays
Dataset link Transcriptomic analyses indicate that ligule initiation recapitulates gene expression patterns that occur at lateral branching

Experimental Protocol


In this study, we analysed the transcriptome associated with ligule formation using laser microdissection RNA-sequencing (LM-RNAseq). We quantified transcript accumulation in the PLB and adjacent pre-blade and pre-sheath regions of wild-type leaf primordia in order to identify candidate genes involved in proximal-distal patterning at the blade-sheath boundary. We also compared transcript accumulation in lg1-R mutants and wild-type siblings to identity genes acting downstream of LG1.

Repositories


GEO

GSE61333

ArrayExpress

E-GEOD-61333

ENA

SRP047035

BioProject

PRJNA260793

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Contact


Michael Scanlon