Dataset features

Specifications


Application: RNA-seq analysis
Number of samples: 2
Release date: Apr 9 2010
Last update date: May 23 2013
Access: Public
Taxon: Bombyx mori, Arabidopsis thaliana, Homo sapiens
Dataset link Single-Base Resolution Methylomes of Silkworms and Functional Importance of Gene Methylation in Insects Revealed by Ultra-High-Throughput Sequencing

Experimental Protocol


Each silk gland of 5th instar larvae of two individuals (called Biological Replicate 1 and 2, respectively) of the silkworm (Bombyx mori) strain Dazao was ground into powder in liquid nitrogen. Half of the powder from each silk gland was used to extract total DNAs using DNeasy Blood & Tissue Kit (Qiagen) and another half was used to extract total RNAs using RNeasy Mini Kit (Qiagen). We sequenced bisulfite-treated total DNA extracted from the silk glands of the two individuals, using Illumina Ultra-High-Throughput Sequencing, generating the Single-Base Resolution Methylomes. To reveal functional consequences of gene body methylation, we generated expression profiles for the two individuals’ silk glands using Digital Gene Expression tag profiling (DGE) technology, which combines classic SAGE (Serial Analysis of Gene Expression) and Illumina ultra-high-throughput sequencing technology.

Repositories


GEO

GSE18315

ArrayExpress

E-GEOD-18315

ENA

SRP002273

BioProject

PRJNA118053

Download


Contact


Hui Xiang