Dataset features

Specifications


Application: RNA-seq analysis
Number of samples: 7
Release date: Dec 5 2014
Last update date: Apr 16 2015
Access: Public
Diseases: Bacterial Infections, Yersinia pseudotuberculosis Infections
Dataset link Complex in vivo RNA-seq analysis reveal reprogramming of Yersinia from virulent to persistent mode during infection [RNA-seq]

Experimental Protocol


Examination of Y. pseudotuberculosis expression in two mouse cecal tissue at early and at persistent infection. Also pure bacterial cultures two at 26C and two 37C. Additionally, the bacterial content of cecal tissue during infections and before infection were analyzed with read mapping on 16SMicrobial NCBI database with non-rRNA-depleted reads.

Repositories


GEO

GSE55292

ArrayExpress

E-GEOD-55292

ENA

SRP038875

BioProject

PRJNA239223

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Contact


Maria Fallman

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