Dataset features

Specifications


Application: RNA-seq analysis
Number of samples: 41
Release date: Sep 25 2017
Last update date: Nov 21 2018
Access: Public
Genes: ASCL1, SOX8, DLX3
Dataset link Rapid chromatin switch in the direct reprogramming of fibroblasts to neurons

Experimental Protocol


Examination of changes of the chromatin accessibility landscape during Ascl1-mediated reprogramming of mouse embryonic fibroblasts (MEFs) into neurons, at distinct timepoints during the reprogramming process. Chromatin changes were correlated with previously published RNA-seq data for control rtTA 48hr and Ascl1 48hr (GSE43916: GSM1074345-8), and newly generated RNA-seq data for Ascl1 7d.

Repositories


GEO

GSE101397

ENA

SRP111819

BioProject

PRJNA394116

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Contact


Qian Yi Lee