Dataset features

Specifications


Application: RNA-seq analysis
Number of samples: 6
Release date: Apr 9 2018
Last update date: Apr 9 2018
Access: Public
Diseases: Leukemia, Biphenotypic, Acute, Inferior Wall Myocardial Infarction
Dataset link Hepatic gene expression analysis between low and high growing hybrid striped bass

Experimental Protocol


Domesticated F8 white bass and F4 striped bass were bred in a partial diallel breeding design to create hybrid striped bass (HSB) and reared in replicate family tanks until large enough to tag with a PIT tag. Thirty-two fish from each of 44 half-sib families were tagged and initial length and weight was recorded before being randomly assigned to one of four 0.04 hectare communal ponds resulting in 5632 individually tagged fingerlings. Fish were allowed to grow for 115 days prior to harvest. At harvest tags were scanned to reveal family of origin, final length and weight were taken. The largest and smallest HSB were sacrificed and liver samples taken. Equimolar amounts of total RNA were pooled from the extreme fish for RNA sequencing.

Repositories


GEO

GSE97547

ENA

SRP103755

BioProject

PRJNA382266

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