Computational protocol: Plectus - a stepping stone in embryonic cell lineage evolution of nematodes

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Protocol publication

[…] The strains Acrobeloides maximus (DF5048), Acrobeloides nanus (ES501), Aphelenchus avenae (RGD103), Bursaphelenchus xylophilus (S10), Caenorhabditis brenneri (SB280), Caenorhabditis briggsae (AF16), Caenorhabditis elegans (N2), Choriorhabditis dudichi (SB122), Diploscapter sp. (JU359), Diploscapter coronatus (PDL0010), Halicephalobus gingivalis (JB128), Panagrolaimus sp. (JU765), Panagrolaimus superbus (DF5050), Plectus aquatilis (PDL0018), Plectus minimus (PDL0012), Plectus sambesii (ES601), Plectus sp. (ES603), Pristionchus pacificus (PS312), Protorhabditis sp. (DF5055), Protorhabditis sp. (JB122), Rhabditis belari (ES103), Rhabditis dolichura (ES101), Teratocephalus lirellus (JB049), Tylocephalus sp. (PDL1001) and Zeldia punctata (PDL0003) were cultured at 23°C on minimal agar plates essentially as described in []. Strains not isolated in our laboratory (ES) were obtained from Paul de Ley and Jim Baldwin, University of California at Riverside, USA; Marie-Anne Felix, Université Jacques Monod, Paris, France; Walter Sudhaus, Freie Universität Berlin, Germany; and Ralf Sommer, MPI for Developmental Biology, Tübingen, Germany. Data for Ascaris were taken from [,], for P. marina from [], and for H. gingivalis from []. Recordings of Meloidogyne incognita were obtained from Bartel Vanholme and Alejandro Calderón-Urrea, California State University, Fresno, USA. […]

Pipeline specifications

Software tools AMOS, Sommer
Databases Meloidogyne
Application GWAS
Organisms Caenorhabditis elegans