Computational protocol: Fungal Presence in Selected Tree Nuts and Dried Fruits

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Protocol publication

[…] Purification and sequencing of the PCR products was performed by MCLAB, and the resulted sequences were trimmed and edited using FinchTV 1.4.0 software. Subsequently, sequence comparisons and speciation were done by utilizing the basic local alignment search tool (BLAST) in Genbank (www.ncbi.nlm.nih.gov/BLAST). […]

Pipeline specifications

Software tools FinchTV, BLASTN
Application Sanger sequencing
Organisms Carica papaya, Ananas comosus, Saccharomyces cerevisiae, Aspergillus niger, Guizotia abyssinica