Dataset features

Specifications


Application: DNA methylation array analysis
Number of samples: 8
Release date: Aug 27 2012
Last update date: Jul 29 2013
Access: Public
Taxon: Zea mays
Dataset link Variation in DNA methylation patterns more common among maize inbreds than among tissues

Experimental Protocol


Methylation profiles for tassel, embryo, endosperm, and leaf of the maize inbred lines B73 and Mo17. Three biological replications for each tissue of each genotype were performed. A custom 2.1M NimbleGen array (GPL13499) was used for embryo, endosperm, and leaf, and a custom 3x1.4M NimbleGen array containing a subset of probes from the 2.1M NimbleGen array (GPL15621) was used for tassel. All of the processed data is based on the largest number of comparable probes (~1.4M) between the two arrays.

Repositories


GEO

GSE38503

ArrayExpress

E-GEOD-38503

BioProject

PRJNA168024

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Contact


Steve Eichten
Steve R Eichten