13CFLUX specifications

Information


Unique identifier OMICS_06426
Name 13CFLUX
Software type Toolkit/Suite
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages C++, Java, Python
Computer skills Advanced
Version 2.0
Stability Stable
Maintained Yes

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Publication for 13CFLUX

13CFLUX in publications

 (12)
PMCID: 5715045
PMID: 29238275
DOI: 10.1007/s11306-017-1302-z

[…] the fluxes through the various pathways and providing a true representation of the metabolic state under studied condition (zamboni et al. ). a number of analysis tools such as fiatflux, openflux, 13cflux2, ims2flux are available for estimating the carbon flux from steady-state 13c-labeling information (poskar et al. ; quek et al. ; weitzel et al. ; zamboni et al. )., to investigate how change […]

PMCID: 5477699
PMID: 28116490
DOI: 10.1007/s00216-016-0174-9

[…] of which the carbon identity was identified or validated in this study. the complete list of added labeling information is listed in electronic supplementary material . for all simulations, we used 13cflux2 software suite []. essentially, 1000 random label distributions were generated from the network, for each of which the associated flux standard deviations were evaluated for the two […]

PMCID: 5192451
PMID: 27941694
DOI: 10.3390/metabo6040045

[…] network. in addition to openflux there are several software packages available to facilitate steady state isotope 13c flux analysis, the most popular are: fiatflux [], metran [], isodesing [], and 13cflux2 [], an updated version of 13cflux []. the different packages differ in the complexity of inputs required, the data processing method, precision of results, computational time, friendliness […]

PMCID: 4912430
PMID: 27159581
DOI: 10.1038/nchembio.2077

[…] braunschweig enzyme database (brenda), and a biochemical genetic and genomic knowledgebase (bigg) to facilitate integration among these existing databases., using the carbon mapping networks and 13cflux2 (www.13cflux.net) package, we obtained cumulated isotopomer models for further analysis in matlab (mathworks). under net flux balance constraint, optimal balanced flux distributions (a […]

PMCID: 4671543
PMID: 26641860
DOI: 10.1371/journal.pone.0144652

[…] to the reference network from the of the cited paper. it is defined in an ftbl file which stands for flux table format. this format was introduced in [] and originally used as input format for 13cflux software. in this plain text file, several sections describe the network topology, measurement data and some additional information. we used only the parts describing the network topology, […]


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13CFLUX institution(s)
Institute of Bio- and Geosciences, IBG-1: Biotechnology, Germany

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