Dataset features

Specifications


Application: Gene expression microarray analysis
Number of samples: 20
Release date: Dec 31 2009
Last update date: Mar 19 2012
Access: Public
Diseases: Composite Lymphoma
Chemicals: Oxygen
Dataset link Oxidative stress transcriptome of japonica rice

Experimental Protocol


This experiment describes the analysis of the temporal changes in gene expression in response to exogenous H2O2 in Nipponbare rice. A total of 5 treatment regimes were examined (1, 3, and 6 hours at 4 mM H2O2 and then 3 and 6 hours of recovery in water after 6 hours of exposure to H2O2). The microarray platform used in this study was the 45K oligonucleotide microarray (www.ricearray.org) which comes in pairs of slides A and B (each containing about 50% of the total number of features). The data described in this series include all hybridizations with slide A and with slide B. All experiments were performed with two independent biological replicates (R1 and R2) for each time point.

Repositories


GEO

GSE10062

ArrayExpress

E-GEOD-10062

BioProject

PRJNA108163

Download


Contact


Benildo de los Reyes
Benildo G de los Reyes