Computational protocol: First description of the complete human xylosyltransferase-I promoter region

Similar protocols

Protocol publication

[…] In silico analysis of transcription factor binding sites was carried out using the Genomatix online software suite, while sequence alignments were performed with Clone Manager 9.0 (Scientific & Educat. Software) and ClustalW (DNA Star Inc.). Evaluation of LD maps and haplotype frequencies was carried out using Haploview 4.0 (Broad Institute) []. Blocks were defined according to the “solid spine of LD” setting in the software. […]

Pipeline specifications

Software tools Clustal W, Haploview
Application GWAS
Organisms Homo sapiens, Pan troglodytes, Mus musculus
Chemicals Nucleotides