16S Classifier specifications

Unique identifier:
OMICS_10244
Interface:
Command line interface
Input data:
Input can be complete 16S rRNA gene or a selected hypervariable region or a combination of multiple hypervariable regions. The input file must be single line nucleotide sequences in fasta format with a '.fasta' extension and the primers should be removed from the sequences before submission.
Programming languages:
Perl, R
Computer skills:
Advanced
Maintained:
Yes
Software type:
Package/Module
Restrictions to use:
None
Operating system:
Unix/Linux, Windows
License:
Commercial
Stability:
Stable
  • Archaebacteria
  • Eubacteria

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16S Classifier specifications

Unique identifier:
OMICS_10244
Restrictions to use:
None
Programming languages:
Perl, PHP, R
Stability:
Stable
Interface:
Web user interface
Input data:
Input can be complete 16S rRNA gene or a selected hypervariable region or a combination of multiple hypervariable regions. The input file must be single line nucleotide sequences in fasta format with a '.fasta' extension and the primers should be removed from the sequences before submission.
Computer skills:
Basic
Maintained:
Yes
  • Archaebacteria
  • Eubacteria

16S Classifier support

Maintainer

  • Vineet K. Sharma <>
  • Vineet K. Sharma <>

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Credits

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Publications

Institution(s)

MetaInformatics Laboratory, Metagenomics and Systems Biology Group, Department of Biological Sciences, Indian Institute of Science Education and Research Bhopal, Madhya Pradesh, India

Funding source(s)

This work was supported by the intramural funding received from Indian Institute of Science Education and Research Bhopal (IISER Bhopal).

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