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16S rRNA reconstruction software tools

Metagenomic data, which contains sequenced DNA reads of uncultured microbial species from environmental samples, provide a unique opportunity to thoroughly analyze microbial species that have never been identified before. Reconstructing 16S…
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Virtual…
Web

Virtual Metagenome

Allows the reconstruction of metagenomes. Virtual Metagenome reflects real…

Allows the reconstruction of metagenomes. Virtual Metagenome reflects real functional compositions and actual transitions of gene pools even though they were virtually reconstructed from denaturing…

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RAMBL
Desktop

RAMBL reference-based ribosome assembly

Integrates taxonomic tree search and Dirichlet process clustering to…

Integrates taxonomic tree search and Dirichlet process clustering to reconstruct full-length 16S gene sequences from metagenomic sequencing data with high accuracy. RAMBL realizes the access to…

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EMIRGE
Desktop
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MATAM
Desktop

MATAM Mapping-Assisted Targeted-Assembly for Metagenomics

Identifies reads originating from marker, and assembles nearly full length 16S…

Identifies reads originating from marker, and assembles nearly full length 16S rRNAs sequences of it. MATAM is an approach based on the construction and exploitation of an overlap graph, carefully…

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REAGO
Desktop

REAGO REconstruct 16S ribosomal RNA Genes from metagenOmic data

Reconstructs 16S rRNA genes from metagenomic data. REAGO is able to accurately…

Reconstructs 16S rRNA genes from metagenomic data. REAGO is able to accurately identify 16S rRNA from error-containing metagenomic datasets at sequence level. The algorithms are robust even if the…

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