Dataset features

Specifications


Dataset type: SNP genotyping by SNP array, Variation
Number of samples: 15
Release date: Oct 15 2015
Last update date: May 23 2017
Access: Public
Dataset link Combination testing using a single MSH5 variant alongside HLA haplotypes improves coeliac disease risk prediction in the Polish population

Experimental Protocol


DNA samples of 336 CD and 264 unrelated healthy controls were used to create DNA pools (9 and 6, respectively) for a genome wide association study (GWAS). GWAS findings were validated with individual HLA tag singlenucleotide polymorphism (SNP) typing of 473 patients and 714 healthy controls.

Repositories


GEO

GSE65424

BioProject

PRJNA273961

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