Dataset features

Specifications


Application: Gene expression microarray analysis, miRNA array analysis
Number of samples: 17
Release date: Feb 18 2014
Last update date: Mar 17 2015
Access: Public
Diseases: Brain Diseases, Nerve Degeneration, Nervous System Diseases, AIDS Dementia Complex, HIV Infections, Neurodegenerative Diseases, Encephalitis, Varicella Zoster
Dataset link MicroRNA-21 dysregulates the expression of MEF2C in neurons in monkey and human SIV/HIV neurological disease

Experimental Protocol


Total cellular RNA was isolated from frozen (−80°C) brain specimens by using TRIzol (Invitrogen, Carlsbad, CA, USA) for the monkey samples, and RNAzol (Biotecx Laboratories, Houston, TX, USA) for the human samples, followed by column purification (miRNeasy, Qiagen, Valencia, CA, USA) as per manufacture's instructions. For the monkeys, four samples were from uninfected animals and four from SIV-infected animals that developed simian AIDS with SIV encephalitis. For the human samples, six samples were from individuals who were HIV negative with no history of dementia or neurocognitive disability and showed no significant neuropathology. Five samples were from HIV positive individuals that were neurocognitively impaired (NNTC clinical rating >6)38 and a neuropathological diagnosis of HIV encephalitis. Clinical information is provided in the supplemental material. For microarray analysis, only three of the HAD specimens were sufficient for use, but all five were used for the qRT-PCR studies.

Repositories


GEO

GSE55069

ArrayExpress

E-GEOD-55069

BioProject

PRJNA238395

Download