Dataset features


Application: RNA-seq analysis
Number of samples: 21
Release date: Apr 9 2017
Last update date: Nov 21 2017
Access: Public
Diseases: Intervertebral Disc Degeneration
Chemicals: Amino Acids, Carbohydrates, Carbon, Maltose, Nitrogen, Sucrose
Computational protocol: BaseSpace, FASTX-Toolkit, TopHat, SAMtools, IGV, Cufflinks, HTSeq, DESeq2, FungiFun, BLASTP, Clustal Omega, MAFFT, MUSCLE, trimAl, RAxML, iTOL
Dataset link A Fungal Transcription Factor Essential for Starch Degradation Regulates Primary Carbon and Nitrogen Metabolism and Amino Acid Biosynthesis

Experimental Protocol

mRNA profiles of cultures of WT and the ∆col-26 mutant after 4 hours of exposure to media of interest were generated by deep sequencing, in triplicate, using Illumina HiSeq 2000.




Yi Xiong

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