Dataset features

Specifications


Application: RNA-seq analysis
Number of samples: 55
Release date: Dec 31 2014
Last update date: Oct 18 2018
Access: Public
Diseases: Brain Neoplasms, Breast Neoplasms, Neoplasms
Dataset link The Sweden Canceromics Analysis Network - Breast (SCAN-B) Initiative: a large-scale multicenter infrastructure towards implementation of breast cancer genomic analyses in the clinical routine [RNA-Seq]

Experimental Protocol


55 RNA samples (49 tumors, 6 as technical replicates) were sequenced (paired-end Illumina) and in parallel analyzed on Human HT12 v4 BeadChip microarrays following the manufacturer’s standard protocol (Illumina). Intrinsic subtypes were determined for both platforms using the gene lists PAM50, Sorlie and Hu. Mutation calling was performed on the RNA-seq data of the 49 tumors.

Repositories


GEO

GSE60788

ENA

SRP046928

BioProject

PRJNA259546

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Contact


Lao Saal

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