Dataset features

Specifications


Application: Gene expression microarray analysis
Number of samples: 6
Release date: Feb 28 2014
Last update date: Jul 29 2014
Access: Public
Diseases: Carcinoma, Hepatocellular, Liver Diseases, Neoplasms, Brachydactyly
Chemicals: Diethylnitrosamine
Dataset link Gene expression profile of hepatocellular carcinoma in low-dose, repeated diethylnitrosamine (DEN)-treated rat treated with erlotinib

Experimental Protocol


Animals received humane care according to the criteria outlined in the “Guide for the Care and Use of Laboratory Animals” of the National Academy of Sciences. All animals were maintained in accordance with the institutional guidelines of the Massachusetts General Hospital Subcommittee on Research Animal Care. Male Wistar rats received weekly IP injections of diethylnitrosamine (DEN) at 50 mg/kg, 100mg/kg, or vehicle control (PBS) for 18 weeks. A subset of rats received either daily (5X a week) IP injections of 2 mg/kg erlotinib or vehicle control during weeks 13 - 18. In a separate study, the erlotinib dose was lowered to 0.5 mg/kg. The vehicle groups from the two studies were not significantly different so they were combined together for analysis. Rats were weighed at the end of each week. Animals were sacrificed at 9, 13 and 19 weeks after a one-week washout period to eliminate acute effects of DEN. At the time of sacrifice, the non-tumor liver tissues were collected in RNase-free tubes and snap-frozen in liquid nitrogen. Frozen tissues were stored at -80°C until RNA extraction.

Repositories


GEO

GSE27638

ArrayExpress

E-GEOD-27638

BioProject

PRJNA141761

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Contact


Yujin Hoshida