Computational protocol: Identification of Functional Subclasses in the DJ-1 Superfamily Proteins

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Protocol publication

[…] THEMATICS analysis was performed on the protein structures according to the procedures described by Ko et al. [], using a Z score cutoff value of 0.99 in the statistical analysis and using a distance cutoff of 9.0 Ã… to form the clusters. Structural alignments were performed using a Combinatorial Extension method and the 3-D Protein Structure Comparison and Alignment Server ( []. Structures were rendered using the graphical programs PyMol ( and Yasara ( […]

Pipeline specifications

Software tools PyMOL, YASARA
Applications Drug design, Protein structure analysis