Dataset features

Specifications


Application: Gene expression microarray analysis
Number of samples: 12
Release date: Dec 20 2014
Last update date: Dec 20 2014
Access: Public
Chemicals: Iron
Dataset link Transcriptomic analysis of Vibrio vulnificus in response to iron concentration and Fur protein

Experimental Protocol


To identify the genes that were under control of Fur, we compared the transcriptomic profile of the wild-type strain with the profile of a mutant strain in Fur protein; in contrast, to identify the genes that were under control of iron, we compared the transcriptomic profile of the wild-type strain grown in iron-rich conditions with the profile of the wild-type strain grown in iron-restricted conditions. For each one of the four samples, three replicates were performed, and RNA was sampled in the mid-log phase of growth (wild-type, 6h; Fur mutant, 6h; wild-type+iron, 5h; wild-type-iron,9h).

Repositories


GEO

GSE60553

ArrayExpress

E-GEOD-60553

BioProject

PRJNA258533

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Contact


David Pajuelo Gámez