Dataset features

Specifications


Application: Gene expression microarray analysis
Number of samples: 48
Release date: Jan 3 2008
Last update date: Mar 17 2012
Access: Public
Diseases: Hypoxia, Brain
Dataset link Stress induced gene expression profiling in Penaeus monodon

Experimental Protocol


An even loop hybridization design with 2 independent (replicate) loops and 12 slides per loop was used to perform a time series comparison of the gene expression profiles in juvenile shrimp subject to different types of stress. Both loops contained different pooled (3 separate shrimp) amplified RNA sample sets to provide biological replication and estimation of population variability. Being a balanced loop design, all samples were labelled with both Cy3 and Cy5. Further information on the design, refer to: (Kerr MK. Biometrics 59: 822-828, 2003).

Repositories


GEO

GSE7456

BioProject

PRJNA100215

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Contact


Enrique de la Vega