Dataset features

Specifications


Application: RNA-seq analysis
Number of samples: 10
Release date: Apr 11 2018
Last update date: Jul 12 2018
Access: Public
Diseases: Muscular Diseases
Dataset link A bacteriophage enzyme induces bacterial metabolic perturbation that confers a novel promiscuous function.

Experimental Protocol


RNA-seq profiles of two plasmid constructs, inducible by IPTG, selected as providing metabolic rescue to E. coli ilvA-. The experiment was performed in duplicates with and without IPTG induction for the insert-bearing plasmids. A duplicate control experiment with empty plasmid in the same E. coli strain (with IPTG added) was also performed. Samples from the same experiments were processed both for RNA-seq and 10-plex TMT quantitative shot-gun proteomics. The TMT dataset is available at ProteomeXchange with identifier PXD005236.

Repositories


GEO

GSE92601

ENA

SRP095369

BioProject

PRJNA358097

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Contact


Dan Andersson