Dataset features

Specifications


Application: RNA-seq analysis
Number of samples: 15
Release date: Oct 28 2016
Last update date: Nov 20 2018
Access: Public
Genes: TET1, TET2, SIN3A
Computational protocol: RepeatMasker, SeqMonk, DESeq2
Dataset link TET-dependent regulation of retrotransposable elements in mouse embryonic stem cells [RNA-seq]

Experimental Protocol


TET1 or TET2 were depleted in embryonic stem cells by shRNA, using a non-targeting sequence (shScr) as a control. RNA was extracted to generate rRNA-depleted RNA-seq libraries (5 replicates of each sample) and small RNA-seq libraries (2 replicates of each sample).

Repositories


GEO

GSE84458

ENA

SRP078583

BioProject

PRJNA329257

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Contact


Miguel Branco

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