Dataset features

Specifications


Application: ATAC-seq analysis
Number of samples: 7
Release date: Jun 30 2016
Last update date: Oct 24 2018
Access: Public
Genes: XIST
Dataset link Allele-specific ATAC-seq

Experimental Protocol


ATAC-seq was performed in mESCs and mNPCs as well as deltaFT NPCs. Libraries(2 replicates per line) were sequenced on an Illumina NextSeq (2x75bp) and data was analyzed allele-specifically. ATAC-seq was also performed inmale mESCs containing a doxycycline-inducible Xist construct at the endogenous locus with or without the functional RepA region. Samples with Xist induction (+dox) and without (-dox) are included.

Repositories


GEO

GSE71156

ENA

SRP061369

BioProject

PRJNA290471

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Contact


Howard Chang