Dataset features

Specifications


Application: SNP array data analysis, aCGH data analysis
Number of samples: 202
Release date: Nov 25 2009
Last update date: Mar 21 2012
Access: Public
Diseases: Infection, Pneumonia, Insomnia, Fatal Familial
Dataset link Isolation and characterization of environmental Bacillus isolates which may harbor B. anthracis virulence genes

Experimental Protocol


Eighty-four query strains were investigated in this study, with each query strain hybridized against the reference strain, Sterne. Two dye-swap experiments were performed with seventeen strains, for a total of four hybridizations per query strain. The other strains have a single dye experiment, for a total of two hybridizations per query strain. Each 70mer oligo spotted on the B. cereus species microarray is spotted once. Positive controls on the array consist of oligos designed from the sequenced reference genome, Sterne, and negative controls on the array consist of oligos designed from the thale cress plant, Arabidopsis thaliana.

Repositories


GEO

GSE19071

ArrayExpress

E-GEOD-19071

BioProject

PRJNA120475

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Contact


Chun-Hua Wan