Computational protocol: Microsporidian Parasites Found in the Hemolymph of Four Baikalian Endemic Amphipods

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Protocol publication

[…] The sequences were aligned using the multisequence alignment program ClustalW within the BioEdit environment []. The phylogenetic relationships between microsporidia representatives were determined using Mega 5.0 (Maximum Likelihood, HKY+G+I model). Bootstrap values were obtained for a consensus tree based on 1000 randomly generated trees using the same package []. […]

Pipeline specifications

Software tools Clustal W, BioEdit, MEGA
Application Phylogenetics
Organisms Hemisus marmoratus, Eulimnogammarus verrucosus