Dataset features

Specifications


Application: RNA-seq analysis
Number of samples: 48
Release date: Sep 28 2016
Last update date: Dec 5 2016
Access: Public
Dataset link Evidence for a role of viruses in the thermal sensitivity of coral photosymbionts

Experimental Protocol


Transcriptional regulation of viral and host antiviral transcripts in response to heat stress by two type C1 Symbiodinium populations was analyzed at three time points. Please note that this is a follow-up study on the GSE72763 data set for a separate publication. Data were re-processed and re-analyzed using the same raw reads and transcriptome assemblies represented in GSE72763 records. The sample records were duplicated for the convenient retrieval of the complete raw data from SRA and the accession of the corresponding (re-analysis) sample is indicated in each sample title. *min250_nr.fasta: de novo transcriptome of each Symbiodinium population, non-redundant transcripts (min transcript length 250 bp) *virus_AnnotationReport.xlsx: virus transcript annotation spreadsheet *antiviral_AnnotationReport.xlsx: antiviral transcript annotation spreadsheet Trinity_*report.complete.5.xls: annotation of all transcripts in each transcriptome *nr.counts.txt: read count matrix for all transcripts in each transcriptome *TMM.fpkm.matrix.txt: FPKM matrix for all transcripts in each transcriptome

Repositories


GEO

GSE77911

ENA

SRP070431

BioProject

PRJNA312092

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Contact


Rachel Levin