Dataset features

Specifications


Application: RNA-seq analysis
Number of samples: 28
Release date: Jan 1 2018
Last update date: Nov 29 2018
Access: Public
Diseases: Neoplasms
Chemicals: Methionine
Computational protocol: TopHat, HTSeq, DESeq2
Dataset link Genome-wide H3K4me3 and gene expression before and after methionine restriction in human cancer cells and mouse liver

Experimental Protocol


We compared H3K4me3 ChIP-seq and RNA-seq data in HCT116 cells cultured in medium containing high (100μM) and low (3μM) methionine, and in liver of C57BL/6J mice fed with diet containing high (0.86% Kcal) and low (0.12% Kcal) methionine.

Repositories


GEO

GSE103602

ENA

SRP117054

BioProject

PRJNA402050

Download


Contact


Jason Locasale

Dataset Statistics

info

Citations per year

Dataset publication