|Application:||RNA-seq analysis, sRNA-seq analysis|
|Number of samples:||28|
|Release date:||May 8 2015|
|Last update date:||Oct 10 2018|
|Dataset link||A potential role for snoRNA in PKR activation during metabolic stress|
MEF cells reconstituted with wild type PKR (PKR_WT) or PKR with a mutation in each dsRBM (PKR_RM) were mock- or palmitate-treated. RNAs associated with PKR were immunoprecipitated. IPed RNAs were extracted, cloned and sequenced. We performed differential expression to obtain RNAs enriched in PKRWT after palmitate treatment. We sequenced three different datasets of samples (A, B and C). Each A and B dataset contains three biological replicates. Dataset C contains a single sample.