Dataset features

Specifications


Application: RNA-seq analysis
Number of samples: 8
Release date: Jul 15 2015
Last update date: Oct 10 2018
Access: Public
Genes: DAXX, ATRX, IGSF11, ADH3, SUV39H1
Taxon: Homo sapiens, Mus musculus
Dataset link The DAXX/ATRX Complex Protects Tandem Repetitive Elements in the Absence of DNA Methylation by Promoting H3K9 Trimethylation [RNA-Seq]

Experimental Protocol


We performed RNA-Seq experiments in four cell lines (J1, J1_DAXX_KO, TKO, and TKO_DAXX_KO) grown with or without media for ground state (vitamin C plus 2i). We then performed RNA-seq analyses for all these cell lines to compare the expression of DAXX/ATRX target genes.

Repositories


GEO

GSE70849

ENA

SRP061023

BioProject

PRJNA289736

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Contact


Quanyuan He