Computational protocol: Modulation of Connexin-36 Gap Junction Channels by Intracellular pH and Magnesium Ions

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Protocol publication

[…] Cx36 homology modelling was carried out with MODELLER (version 9.10) (Webb and Sali, ), using a Cx26 crystal structure (Maeda et al., ) as a template. The prediction of pKa values of ionizable groups in Cx36 was based on the 3D structure and was performed with PROPKA (version 3.0) (Olsson et al., ; Søndergaard et al., ). […]

Pipeline specifications

Software tools MODELLER, PROPKA
Application Protein structure analysis
Organisms Homo sapiens
Chemicals Magnesium, Glutamic Acid