Dataset features

Specifications


Application: Gene expression microarray analysis
Number of samples: 18
Release date: Aug 1 2017
Last update date: Aug 1 2017
Access: Public
Taxon: Phytophthora parasitica, Solanum lycopersicum
Dataset link Transcriptome analysis of phosphonate-pretreated tomato in response to inoculation with Phytophthora parasitica

Experimental Protocol


We treated the tomato plants with NPA or water (ddH2O, as a control) for three days, and then inoculated the plants with zoospores of P. parasitica. For microarray analysis by the use of Affymetrix Tomato Genome Array, total RNAs were isolated from plant leaves at: (1) 3 days post treatment (dpt) with NPA or water, (2) 6 hours post inoculation (hpi) of the NPA- or water-pretreated plants, (3) 12 hpi of the NPA- or water-pretreated plants. To reduce the biological variability, each hybridization experiment was performed with RNA prepared from pools of five plants. The total set of experiments was repeated three times.

Repositories


GEO

GSE40164

BioProject

PRJNA173209

Download


Contact


Ruey-Fen Liou