Dataset features

Specifications


Application: BS-seq analysis
Number of samples: 5
Release date: May 8 2016
Last update date: Sep 12 2018
Access: Public
Genes: UHRF1, SETDB1, DNMT1
Dataset link Protracted NP95 binding to hemimethylated DNA disrupts SETDB1-mediated proviral silencing [RRBS-seq]

Experimental Protocol


RNA-seq for Np95, Dnmt1 and Setdb1 wt, single conditional KO (cKO) and double cKO ES cells; RRBS-seq for Dnmt1 and Np95 single and double cKO ESCs; Myc-tagged NP95, DNMT1 ChIP-seq; and wt and Np95wt and cKO H3K9me3 ChIP-seq.

Repositories


GEO

GSE77780

ENA

SRP069863

BioProject

PRJNA311543

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Contact


Takaho Endo