Dataset features

Specifications


Application: RNA-seq analysis
Number of samples: 8
Release date: Jun 5 2016
Last update date: Oct 2 2016
Access: Public
Diseases: Citrullinemia
Chemicals: Squalene
Computational protocol: TAIR, cutadapt, TopHat, Cufflinks, HTSeq, DESeq2, TransDecoder, DAVID
Dataset link Metabolic Engineering of Squalene Biosynthesis via Different Genomes Impacts Non-target Cellular Metabolomic and Transcriptomic Pathways

Experimental Protocol


RNA-seq in Nicotiana tabacum lines engineered via the chloroplast, nuclear or both genomes to express genes encoding farnesyl diphosphate synthase (FPS) and squalene synthase (SQS) to promote squalene synthesis

Repositories


GEO

GSE74103

ENA

SRP064915

BioProject

PRJNA299013

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Contact


Henry Daniell

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