Computational protocol: Tibet as a Potential Domestication Center of Cultivated Barley of China

Similar protocols

Protocol publication

[…] Multiple sequence alignments were performed using ClustalX . Nucleotide diversity and tests of neutral evolution were performed using the software program DnaSP 4.0 by Tajima’s π, Watterson’s θ and Fu and Li . Phylogenetic analysis was performed with the computer program PAUP* ver. 4 beta 10 . The neighbour-joining (NJ) method using Tajima-Nei distance was used for phylogenetic construction. […]

Pipeline specifications

Software tools Clustal W, DnaSP, PAUP*
Application Phylogenetics
Organisms Hordeum vulgare, Hordeum vulgare subsp. vulgare