Dataset features

Specifications


Application: Gene expression microarray analysis, miRNA array analysis
Number of samples: 12
Release date: May 19 2009
Last update date: Aug 28 2018
Access: Public
Diseases: Central Nervous System Diseases
Dataset link Effects of Nipped-B and Rad21 sister chromatid cohesin proteins on gene expression in Drosophila ML-DmBG3 cells

Experimental Protocol


Effects of cohesin knockdown on E(spl)-C and invected-engrailed transcription vary over time, so we used two independent samples for three days after RNAi treatment, one four day and one six day sample for both Nipped-B and Rad21 knockdown, and mock RNAi controls for each time point. For RNAi treatment, cells were plated at 5x106 cells per 3 cm well. Media was replaced with 1 ml of Express Five SFM (Invitrogen) with 1% FCS, and 10 micrograms per ml insulin. The indicated amount of dsRNA was added per well. Media was adjusted to 3 ml and 10% FCS with Schneider’s media after 2 hrs. Cells were replated as needed. Templates for dsRNA synthesis were made by PCR from cDNA templates using primers with T7 promoters (see supplementary file linked below). Equal amounts of two dsRNAs against each target were used.

Repositories


GEO

GSE16152

ArrayExpress

E-GEOD-16152

BioProject

PRJNA117171

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Contact


Akbar Siddiqui

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